Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Gonad

Cell type

Testis

MeSH Description

The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Sample

sample_type

tissue

tissue

testis

sex

male

dev_stage

adult

age

37 year

donor ID

ENCDO845WKR

lab

Bradley Bernstein, Broad

source

Kristin Ardlie

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/f35827f6-da4a-42a6-b4bd-9e1b8b6c1663/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v2.0.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

24481554

Reads aligned (%)

96.8

Duplicates removed (%)

5.5

Number of peaks

24622 (qval < 1E-05)

hg19

Number of total reads

24481554

Reads aligned (%)

95.8

Duplicates removed (%)

6.5

Number of peaks

24466 (qval < 1E-05)