Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Gonad
Cell type
Testis
MeSH Description
The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Attributes by original data submitter

Sample

sample_type
tissue
tissue
testis
sex
male
dev_stage
adult
age
54 year
donor ID
ENCDO451RUA
lab
Bradley Bernstein, Broad
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
60754342
Reads aligned (%)
98.4
Duplicates removed (%)
4.6
Number of peaks
21426 (qval < 1E-05)

hg19

Number of total reads
60754342
Reads aligned (%)
97.3
Duplicates removed (%)
5.6
Number of peaks
21174 (qval < 1E-05)

Base call quality data from DBCLS SRA