Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
Peyers Patches
NA
NA

Attributes by original data submitter

Sample

sample_type
tissue
tissue
Peyer's patch
sex
female
dev_stage
adult
age
51 year
donor ID
ENCDO271OUW
lab
Bradley Bernstein, Broad
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
66045590
Reads aligned (%)
98.2
Duplicates removed (%)
3.5
Number of peaks
14893 (qval < 1E-05)

hg19

Number of total reads
66045590
Reads aligned (%)
97.1
Duplicates removed (%)
4.9
Number of peaks
14347 (qval < 1E-05)

Base call quality data from DBCLS SRA