Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Gonad
Cell type
Testis
MeSH Description
The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Attributes by original data submitter

Sample

sample_type
tissue
tissue
testis
sex
male
dev_stage
adult
age
37 year
donor ID
ENCDO845WKR
lab
Bradley Bernstein, Broad
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
59536421
Reads aligned (%)
97.8
Duplicates removed (%)
7.2
Number of peaks
1595 (qval < 1E-05)

hg19

Number of total reads
59536421
Reads aligned (%)
96.6
Duplicates removed (%)
8.6
Number of peaks
1330 (qval < 1E-05)

Base call quality data from DBCLS SRA