Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562 cells
cell type
erythroid leukemia
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Fixed chromatin was sheared for HIF-1alpha ChIP. ChIPed DNA was reverse-crosslinked and purified for sequencing Library was prepared with standard Illumina protocol by the University of Chicago Sequencing Core

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
46165938
Reads aligned (%)
99.1
Duplicates removed (%)
21.7
Number of peaks
1320 (qval < 1E-05)

hg19

Number of total reads
46165938
Reads aligned (%)
98.0
Duplicates removed (%)
23.4
Number of peaks
1168 (qval < 1E-05)

Base call quality data from DBCLS SRA