SRX749147
E11 cortex Sox2 ChIP-seq 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryo
Cell type
Embryonic brains
NA
NA

Attributes by original data submitter

Sample

sampletitle
E11 Cortex Sox2 ChIPseq 2
strain
CD1
age
E11.5
biomaterial_provider
CMB animal unit
sex
not collected
tissue
cortex
celltype
cortex tissue
collectedby
Daniel Hagey
devstage
E11.5
genotype
WT
sampletype
ChIP-seq

Sequenced DNA Library

library_name
E11 cortex Sox2 ChIP-seq 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
38057674
Reads aligned (%)
74.8
Duplicates removed (%)
46.9
Number of peaks
4176 (qval < 1E-05)

mm9

Number of total reads
38057674
Reads aligned (%)
74.7
Duplicates removed (%)
47.0
Number of peaks
4160 (qval < 1E-05)

Base call quality data from DBCLS SRA