Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Irf8

Cell type

Cell type Class
Blood
Cell type
Plasmacytoid dendritic cells
NA
NA

Attributes by original data submitter

Sample

source_name
pdc_irf8
cell type
pDC
tissue
Bone marrow
strain
C57BL/6
chip antibody
Irf8

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixated, lyzed and nuclei were sonicated. Sonicated nuclei were mixed with protein G magnetic dynabeads coupled to target antibbody. Libraries were prepared for sequencing using a method developed at Dr. Ido Amit's lab, Weizmann Institute of Science

Sequencing Platform

instrument_model
Illumina HiSeq 1500

mm10

Number of total reads
8302200
Reads aligned (%)
98.0
Duplicates removed (%)
10.1
Number of peaks
9857 (qval < 1E-05)

mm9

Number of total reads
8302200
Reads aligned (%)
97.8
Duplicates removed (%)
10.3
Number of peaks
9892 (qval < 1E-05)

Base call quality data from DBCLS SRA