Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Spi1

Cell type

Cell type Class
Blood
Cell type
Plasmacytoid dendritic cells
NA
NA

Attributes by original data submitter

Sample

source_name
Sample_MC_12_pDC_pu1
cell type
pDC
tissue
Bone marrow
strain
C57BL/6
chip antibody
Pu.1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixated, lyzed and nuclei were sonicated. Sonicated nuclei were mixed with protein G magnetic dynabeads coupled to target antibbody. Libraries were prepared for sequencing using a method developed at Dr. Ido Amit's lab, Weizmann Institute of Science

Sequencing Platform

instrument_model
Illumina HiSeq 1500

mm10

Number of total reads
23489469
Reads aligned (%)
97.2
Duplicates removed (%)
12.7
Number of peaks
43310 (qval < 1E-05)

mm9

Number of total reads
23489469
Reads aligned (%)
97.0
Duplicates removed (%)
12.7
Number of peaks
43288 (qval < 1E-05)

Base call quality data from DBCLS SRA