Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
RL
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma B-cell

Attributes by original data submitter

Sample

source_name
RL cell line
cell line
RL
genotype
Transfected with CRISPR gRNAs inducing CREBBP point mutation

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA-seq libraries were prepared using the Illumina TruSeq stranded mRNA sample kits, respectively, according to the manufacturer ChIP-seq ws performed using H3K27Ac antibodies (Active Motif; catalog No. 39133). ChIPseq libraries were prepared using KAPA Hyper Prep Kits (Roche) and TruSeq adaptors according to the manufacturer

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
51539982
Reads aligned (%)
96.4
Duplicates removed (%)
5.4
Number of peaks
27995 (qval < 1E-05)

hg19

Number of total reads
51539982
Reads aligned (%)
95.8
Duplicates removed (%)
5.6
Number of peaks
27069 (qval < 1E-05)

Base call quality data from DBCLS SRA