Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
RL
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma B-cell

Attributes by original data submitter

Sample

source_name
RL cell line
cell line
RL
genotype
Transfected with CRISPR gRNAs inducing CREBBP frameshift mutation

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA-seq libraries were prepared using the Illumina TruSeq stranded mRNA sample kits, respectively, according to the manufacturer ChIP-seq ws performed using H3K27Ac antibodies (Active Motif; catalog No. 39133). ChIPseq libraries were prepared using KAPA Hyper Prep Kits (Roche) and TruSeq adaptors according to the manufacturer

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
92683389
Reads aligned (%)
98.4
Duplicates removed (%)
4.8
Number of peaks
2186 (qval < 1E-05)

hg19

Number of total reads
92683389
Reads aligned (%)
97.3
Duplicates removed (%)
5.1
Number of peaks
728 (qval < 1E-05)

Base call quality data from DBCLS SRA