SRX7411424
GSM4224982: bcCML shStaufen 2 shRNA input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562 cells
cell line
K562 cells
condition
Stau2 shRNA
antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Zymo ChIP DNA clean & concentrator KAPA Hyper Prep Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32693277
Reads aligned (%)
96.6
Duplicates removed (%)
5.2
Number of peaks
1164 (qval < 1E-05)

hg19

Number of total reads
32693277
Reads aligned (%)
95.3
Duplicates removed (%)
6.6
Number of peaks
875 (qval < 1E-05)

Base call quality data from DBCLS SRA