SRX7411419
GSM4224977: bcCML shControl H3K4me3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562 cells
cell line
K562 cells
condition
Control shRNA
antibody
H3K4me3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Zymo ChIP DNA clean & concentrator KAPA Hyper Prep Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
49301029
Reads aligned (%)
97.7
Duplicates removed (%)
8.2
Number of peaks
24537 (qval < 1E-05)

hg19

Number of total reads
49301029
Reads aligned (%)
96.7
Duplicates removed (%)
9.5
Number of peaks
23984 (qval < 1E-05)

Base call quality data from DBCLS SRA