Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
IRF1

Cell type

Cell type Class
Blood
Cell type
U-937
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Diffuse Large B Cell

Attributes by original data submitter

Sample

source_name
U937-PR9
cell type
U937-PR9
method
ChIP-Seq
factor
IRF1 (Santa Cruz, catalog# sc-497)
molecule subtype
nuclear chromatin

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
When performing ChIA-PET library, the same precedures were used as those in previous paper. (Li et al., 2012; Tang et al., 2015) Paired-end sequencing (2 ×150bp) was used for ChIP-Seq libraries with Illumina Nextseq 500.

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
53442984
Reads aligned (%)
113.0
Duplicates removed (%)
5.6
Number of peaks
273 (qval < 1E-05)

hg38

Number of total reads
53442984
Reads aligned (%)
113.7
Duplicates removed (%)
5.5
Number of peaks
243 (qval < 1E-05)

Base call quality data from DBCLS SRA