Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
BLaER1
NA
NA

Attributes by original data submitter

Sample

source_name
Leukemia cell line
cell line
BLaER
treatment
CEBPA
time
24h
chip antibody
anti-CTCF (Millipore, 07-729, 3059608)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
20289338
Reads aligned (%)
189.3
Duplicates removed (%)
2.3
Number of peaks
38616 (qval < 1E-05)

hg38

Number of total reads
20289338
Reads aligned (%)
190.8
Duplicates removed (%)
2.2
Number of peaks
38897 (qval < 1E-05)

Base call quality data from DBCLS SRA