Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HEK293FT cell line
cell line
HEK293FT
tag
none
cell type
embryonal kidney
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with the antibody. Libraries were constructed using the ChIP-seq sample preparation kit (Illumina, San Diego, California, USA)

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
29704353
Reads aligned (%)
92.3
Duplicates removed (%)
16.1
Number of peaks
440 (qval < 1E-05)

hg19

Number of total reads
29704353
Reads aligned (%)
91.8
Duplicates removed (%)
17.1
Number of peaks
671 (qval < 1E-05)

Base call quality data from DBCLS SRA