Curated Sample Data


Genome
hg19
Antigen Class
TFs and others
Antigen
HOXA9
Cell type Class
Kidney
Cell type
293

Cell type information


Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by Original Data Submitter


source_name
HEK293FT cell line expressing HOXA9-FLAG
cell line
HEK293FT cell line expressing HOXA9-FLAG
tag
FLAG
cell type
embryonal kidney
chip antibody
Monoclonal ANTI-FLAGĀ® M2 (SIGMA ALDRICH, F3165, lot-SLBG5311 )

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with the antibody. Libraries were constructed using the ChIP-seq sample preparation kit (Illumina, San Diego, California, USA)

Platform Information


instrument_model
Illumina Genome Analyzer II

External Database Query

Logs in read processing pipeline


Number of total reads
22945969
Reads aligned (%)
92.8
Duplicates removed (%)
12.8
Number of peaks
375 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA