SRX7371448
GSM4218357: ECTOINPUT; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived ectodermal cells
NA
NA

Attributes by original data submitter

Sample

source_name
H9-ectoderm
cell line
human embryonic stem cell H9
cell type
ectoderm
gender
female
treatment
none
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
1x10^7 cells, fragmentation by sonicator, p53-DNA complexes were enriched with antibody. Libraries were prepared according to Illumina's instructions accompanying the TruSeq ChIP Library Preparation Kit (IP-202-1024).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
38579265
Reads aligned (%)
98.5
Duplicates removed (%)
11.7
Number of peaks
1831 (qval < 1E-05)

hg19

Number of total reads
38579265
Reads aligned (%)
97.5
Duplicates removed (%)
12.2
Number of peaks
618 (qval < 1E-05)

Base call quality data from DBCLS SRA