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For hg38
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Peak-call (q < 1E-10)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: TP53
wikigenes
PDBj
CellType: hESC derived ectodermal cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX7371445
GSM4218354: ECTO1865 2; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
TP53
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC derived ectodermal cells
NA
NA
Attributes by original data submitter
Sample
source_name
H9-ectoderm_p53_ IFI16sh1865
cell line
human embryonic stem cell H9
cell type
ectoderm
gender
female
treatment
IFI16 knockdown
antibody
p53 (Santa Cruz, sc-126)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
1x10^7 cells, fragmentation by sonicator, p53-DNA complexes were enriched with antibody. Libraries were prepared according to Illumina's instructions accompanying the TruSeq ChIP Library Preparation Kit (IP-202-1024).
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
51113245
Reads aligned (%)
97.5
Duplicates removed (%)
49.5
Number of peaks
2351 (qval < 1E-05)
hg19
Number of total reads
51113245
Reads aligned (%)
96.4
Duplicates removed (%)
50.0
Number of peaks
1457 (qval < 1E-05)
Base call quality data from
DBCLS SRA