Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
CWR22Pc
NA
NA

Attributes by original data submitter

Sample

source_name
Prostate cancer cells
cell line
CWR22PC
cell type
Prostate cancer
chip antibody
AR (Millipore, 06-680)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP library was prepared for sequencing by the SOLiD (LNCaP-AR and VCaP) or HiSeq2000 (CWR22PC) instruments according to manufacturer recommended procedures.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
1773568
Reads aligned (%)
60.0
Duplicates removed (%)
39.5
Number of peaks
554 (qval < 1E-05)

hg38

Number of total reads
126192565
Reads aligned (%)
63.2
Duplicates removed (%)
36.3
Number of peaks
47058 (qval < 1E-05)

Base call quality data from DBCLS SRA