Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TLX1

Cell type

Cell type Class
Blood
Cell type
ALL-SIL
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
ALL-SIL cell line
cell line
ALL-SIL
chip antibody
anti-TLX1 (C-18 rabbit polyclonal antibody (sc-880), Santa Cruz Biotechnology)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was purified by phenol/chloroform extraction, assisted by phase lock gel tubes (5Prime). standard illumina library prep, unstranded paired end

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
42958271
Reads aligned (%)
175.7
Duplicates removed (%)
3.9
Number of peaks
12241 (qval < 1E-05)

hg38

Number of total reads
42958271
Reads aligned (%)
178.1
Duplicates removed (%)
3.7
Number of peaks
13261 (qval < 1E-05)

Base call quality data from DBCLS SRA