SRX7198493
GSM4186543: RT4 OMNI-ATAC; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
RT4
Primary Tissue
Urinary Bladder
Tissue Diagnosis
Carcinoma Transitional Cell

Attributes by original data submitter

Sample

source_name
bladder cancer cell line
cell line
RT4
tissue type
bladder cell line
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
OMNI-ATAC protocol was performed on 100000 RT4 cells. Library was prepared according to OMNI-ATAC protocol and amplified for 11 cycles.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35418191
Reads aligned (%)
83.2
Duplicates removed (%)
40.7
Number of peaks
67910 (qval < 1E-05)

hg19

Number of total reads
35418191
Reads aligned (%)
83.0
Duplicates removed (%)
40.9
Number of peaks
67664 (qval < 1E-05)

Base call quality data from DBCLS SRA