Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
G1ME_GATA1s_ChIP_input
strain background
129
cell line
G1ME
cell type
immortalized, developmentally arrested megakaryocyte-erythroid progenitors (MEPs) derived from in vitro differentiation of murine Gata1-ES cells
transduced with
MIGR1-GATA1s-HA
timepoint
bipotential progenitors at 42 hrs post transduction
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and HA-GATA1 or HA-GATA1s DNA complexes were isolated with anti-HA antibody. Libraries were prepared using the protocol as outlined for Illumina's TruSeq ChIP Sample Prep Kit ( IP-202-1012), except that the libraries were size selected using Agencourt SPRIselect beads for an average size of ~300-325bp prior to PCR amplification. Library quality was assessed using the Aglient Bioanalzyer 2100 and libraries were sequenced on the Illumina HiSeq2000.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
30933340
Reads aligned (%)
95.1
Duplicates removed (%)
16.1
Number of peaks
535 (qval < 1E-05)

mm9

Number of total reads
30933340
Reads aligned (%)
94.9
Duplicates removed (%)
16.1
Number of peaks
547 (qval < 1E-05)

Base call quality data from DBCLS SRA