SRX717860
GSM1517096: P300 TA+TNFα; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EP300

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa B2 cells
cell line
HeLa
treatment protocol
1µM of Triamcinolonacetonide (T6501, Sigma-Aldrich) with 10ng/ml Tumor necrosis factor a (T0157, Sigma-Aldrich) for the last 1 hour.
chip antibody
P300 (sc-585x, Santa Cruz biotechnology)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28838441
Reads aligned (%)
96.3
Duplicates removed (%)
18.9
Number of peaks
28623 (qval < 1E-05)

hg19

Number of total reads
28838441
Reads aligned (%)
95.7
Duplicates removed (%)
19.6
Number of peaks
28545 (qval < 1E-05)

Base call quality data from DBCLS SRA