Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD2

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
cell
K562
antibodies
BRD2
antibody lot number
Active Motif 61797
dilution
rabbit pAb 1:100

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
https://elifesciences.org/articles/21856 Low-input single-stranded library construction protocol as per PMIDs 23493070 & 26771485

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
10207535
Reads aligned (%)
96.4
Duplicates removed (%)
6.8
Number of peaks
3882 (qval < 1E-05)

hg19

Number of total reads
10207535
Reads aligned (%)
95.3
Duplicates removed (%)
8.1
Number of peaks
3711 (qval < 1E-05)

Base call quality data from DBCLS SRA