SRX7135369
GSM4159289: AG15821 BRD4 K562 ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
cell
K562
antibodies
BRD4
antibody lot number
Active Motif 39909
dilution
rabbit pAb 1:100

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
https://elifesciences.org/articles/21856 Low-input single-stranded library construction protocol as per PMIDs 23493070 & 26771485

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15355498
Reads aligned (%)
94.7
Duplicates removed (%)
10.8
Number of peaks
4400 (qval < 1E-05)

hg19

Number of total reads
15355498
Reads aligned (%)
94.0
Duplicates removed (%)
11.2
Number of peaks
4236 (qval < 1E-05)

Base call quality data from DBCLS SRA