SRX7135365
GSM4159285: AG15649 BRD2 K562 ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD2

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
cell
K562
antibodies
BRD2
antibody lot number
Active Motif 61797
dilution
rabbit pAb 6:100

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
https://elifesciences.org/articles/21856 Low-input single-stranded library construction protocol as per PMIDs 23493070 & 26771485

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
11822235
Reads aligned (%)
95.4
Duplicates removed (%)
16.9
Number of peaks
9717 (qval < 1E-05)

hg38

Number of total reads
11822235
Reads aligned (%)
96.4
Duplicates removed (%)
15.0
Number of peaks
10008 (qval < 1E-05)

Base call quality data from DBCLS SRA