Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMARCA4

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Sample_DMSO_CR_Control_BRG1
cell line
MCF-7
cell line
Breast Cancer Cells
genotype
Control
sgguide
sgNT
chip-antibody
BRG1-2 (Abcam, ab110641)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
25513888
Reads aligned (%)
98.2
Duplicates removed (%)
11.8
Number of peaks
14861 (qval < 1E-05)

hg19

Number of total reads
25513888
Reads aligned (%)
97.6
Duplicates removed (%)
12.7
Number of peaks
15064 (qval < 1E-05)

Base call quality data from DBCLS SRA