Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Breast

Cell type

MCF-7

Primary Tissue

Breast

Site of Extraction

Pleura

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

Mamary gland epithelial cell

cell type

Breast adenocarcinoma

gender

female

chip antibody

none

cell line

MCF-7

agent

doxycycline+ tamoxifen

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

MCF-7 chromatin was sonicated and PAX2 bond genomic regions were isolated by using HA tag antibody. Libraries were prepared by Norwegian sequencing centre and CRUK genomics core facility

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

18800470

Reads aligned (%)

99.1

Duplicates removed (%)

3.1

Number of peaks

185 (qval < 1E-05)

hg19

Number of total reads

18800470

Reads aligned (%)

98.5

Duplicates removed (%)

4.2

Number of peaks

656 (qval < 1E-05)