SRX7114563
GSM4153426: Input DNA Dox; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Mamary gland epithelial cell
cell type
Breast adenocarcinoma
gender
female
chip antibody
none
cell line
MCF-7
agent
doxycycline

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
MCF-7 chromatin was sonicated and PAX2 bond genomic regions were isolated by using HA tag antibody. Libraries were prepared by Norwegian sequencing centre and CRUK genomics core facility

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24831510
Reads aligned (%)
99.0
Duplicates removed (%)
16.2
Number of peaks
217 (qval < 1E-05)

hg19

Number of total reads
24831510
Reads aligned (%)
98.4
Duplicates removed (%)
17.3
Number of peaks
783 (qval < 1E-05)

Base call quality data from DBCLS SRA