Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TEAD1

Cell type

Cell type Class
Digestive tract
Cell type
Pharynx cancer cells
NA
NA

Attributes by original data submitter

Sample

source_name
human pharynx cancer cells
age
Adult
chip antibody
anti TEF1/TEAD-1 (Abcam, ab133533)
treatment
DMSO

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
25060692
Reads aligned (%)
94.2
Duplicates removed (%)
3.8
Number of peaks
1025 (qval < 1E-05)

hg38

Number of total reads
25060692
Reads aligned (%)
96.3
Duplicates removed (%)
2.6
Number of peaks
814 (qval < 1E-05)

Base call quality data from DBCLS SRA