SRX7089367
GSM4146582: Control ChIP-seq from breast epithelium (ENCLB295PQR); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Breast epithelium
NA
NA

Attributes by original data submitter

Sample

sample_type
tissue
tissue
breast epithelium
sex
female
dev_stage
adult
age
51 year
donor ID
ENCDO271OUW
lab
Bradley Bernstein, Broad
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
data sheet: https://www.encodeproject.org/documents/40ac95fd-dcb1-4172-9163-a32fdde3a101/@@download/attachment/Encode%20Public%20IDs.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
49648248
Reads aligned (%)
97.8
Duplicates removed (%)
3.1
Number of peaks
1784 (qval < 1E-05)

hg19

Number of total reads
49648248
Reads aligned (%)
96.7
Duplicates removed (%)
4.5
Number of peaks
1213 (qval < 1E-05)

Base call quality data from DBCLS SRA