SRX7089345
GSM4146560: DNase-seq from Peyer's patch (ENCLB574TGJ); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
Peyers Patches
NA
NA

Attributes by original data submitter

Sample

sample_type
tissue
tissue
Peyer's patch
sex
male
dev_stage
adult
age
37 year
donor ID
ENCDO845WKR
lab
John Stamatoyannopoulos, UW
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
129833438
Reads aligned (%)
97.9
Duplicates removed (%)
29.3
Number of peaks
68261 (qval < 1E-05)

hg19

Number of total reads
129833438
Reads aligned (%)
97.6
Duplicates removed (%)
29.9
Number of peaks
72451 (qval < 1E-05)

Base call quality data from DBCLS SRA