Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
Peyers Patches
NA
NA

Attributes by original data submitter

Sample

sample_type
tissue
tissue
Peyer's patch
sex
male
dev_stage
adult
age
37 year
donor ID
ENCDO845WKR
lab
Bradley Bernstein, Broad
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
43325568
Reads aligned (%)
95.9
Duplicates removed (%)
3.8
Number of peaks
1191 (qval < 1E-05)

hg19

Number of total reads
43325568
Reads aligned (%)
94.8
Duplicates removed (%)
4.9
Number of peaks
1100 (qval < 1E-05)

Base call quality data from DBCLS SRA