ChIP-Atlas: SRX7089178

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Histone
Antigen: H3K27me3

Cell type

Cell type Class: Breast
Cell type: Breast epithelium
NA: NA

Attributes by original data submitter

Sample

sample_type: tissue
tissue: breast epithelium
sex: female
dev_stage: adult
age: 51 year
donor ID: ENCDO271OUW
lab: Bradley Bernstein, Broad
source: Kristin Ardlie

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model: Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 81378278
Reads aligned (%): 95.7
Duplicates removed (%): 8.9
Number of peaks: 2009 (qval < 1E-05)

hg19

Number of total reads: 81378278
Reads aligned (%): 94.8
Duplicates removed (%): 10.1
Number of peaks: 1342 (qval < 1E-05)

Base call quality data from DBCLS SRA