Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PAX5

Cell type

Cell type Class
Blood
Cell type
RAMOS
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

source_name
Ramos cell line
cell line
Ramos
cell type
Burkitt's lymphoma-derived cell line, EBV-negative
genotype
WT
cell line source gender
male
chip antibody
Pax5
chip antibody vendor
Novus
input sample used
ChIP-INPUT1

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
24412301
Reads aligned (%)
96.8
Duplicates removed (%)
2.9
Number of peaks
275 (qval < 1E-05)

hg19

Number of total reads
24412301
Reads aligned (%)
95.9
Duplicates removed (%)
3.3
Number of peaks
235 (qval < 1E-05)

Base call quality data from DBCLS SRA