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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: SuUR
wikigenes
PDBj
CellType: 2h embryos
ATCC
MeSH
RIKEN BRC
SRX706814
GSM1508403: OrR st12-13 SUUR; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
SuUR
Cell type
Cell type Class
Embryo
Cell type
2h embryos
NA
NA
Attributes by original data submitter
Sample
source_name
pooled stage 12 and 13 egg chambers
strain
OrR
chip antibody
SUUR (made in-house)
developmental stage
pooled stage 12 and 13
tissue
egg chamber
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Egg chambers were dounced and sonicated using a Biorupto 300 (Diagenode) Libraries were constrcted using the NEB Next ChIP seq kit (Part # E6200S) according to manufactures recommendations with indexing primers for multiplexing
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
21233132
Reads aligned (%)
58.4
Duplicates removed (%)
46.6
Number of peaks
2083 (qval < 1E-05)
dm3
Number of total reads
21233132
Reads aligned (%)
58.6
Duplicates removed (%)
44.0
Number of peaks
1323 (qval < 1E-05)
Base call quality data from
DBCLS SRA