Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SuUR

Cell type

Cell type Class
Adult
Cell type
Egg chamber
NA
NA

Attributes by original data submitter

Sample

source_name
stage 10 egg chambers from OrR
strain
OrR
chip antibody
SUUR (made in-house)
developmental stage
stage 10
tissue
egg chamber

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Egg chambers were dounced and sonicated using a Biorupto 300 (Diagenode) Libraries were constrcted using the NEB Next ChIP seq kit (Part # E6200S) according to manufactures recommendations with indexing primers for multiplexing

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm3

Number of total reads
23681642
Reads aligned (%)
35.0
Duplicates removed (%)
48.6
Number of peaks
2212 (qval < 1E-05)

dm6

Number of total reads
23681642
Reads aligned (%)
32.4
Duplicates removed (%)
52.1
Number of peaks
2286 (qval < 1E-05)

Base call quality data from DBCLS SRA