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For mm10
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Neuro-2a
ATCC
MeSH
RIKEN BRC
SRX706574
GSM1508394: Lhx5-FLAG Input; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Neural
Cell type
Neuro-2a
Tissue
Brain
Cell Type
Neuroblast
Disease
Neuroblastoma
Attributes by original data submitter
Sample
source_name
Neuro2a cells expressing doxycycline-dependent Lhx5
strain
C57BL/6
cell type
Neuro2a
treatment
Lhx5-FLAG expression with Doxycycline induced
chip antibody
none
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cell lysates were sonicated and Lhx5-bound DNA isolated with an anti-FLAG antibody. Cellular protein and RNA was digested and the DNA was purified Libraries were constructed with the NEB CHIPseq Master Mix Prep Kit for Illumina
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
41081451
Reads aligned (%)
98.0
Duplicates removed (%)
13.3
Number of peaks
515 (qval < 1E-05)
mm9
Number of total reads
41081451
Reads aligned (%)
97.8
Duplicates removed (%)
13.3
Number of peaks
613 (qval < 1E-05)
Base call quality data from
DBCLS SRA