SRX7036325
GSM4134963: 1% Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
hESCs H9 cells
cell type
hESCs H9 cells
antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34671691
Reads aligned (%)
85.5
Duplicates removed (%)
0.7
Number of peaks
5263 (qval < 1E-05)

hg19

Number of total reads
34671691
Reads aligned (%)
83.8
Duplicates removed (%)
1.3
Number of peaks
4478 (qval < 1E-05)

Base call quality data from DBCLS SRA