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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: EGR1
wikigenes
PDBj
CellType: CD34+
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX7031580
GSM4134102: EGR1 CD34 CUTRUN; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
EGR1
Cell type
Cell type Class
Blood
Cell type
CD34+
NA
NA
Attributes by original data submitter
Sample
source_name
CD34+ cells
cell type
CD34+ cells
chip antibody
EGR1 BETHYL RABBIT POLICLONAL A303
treatment
CD34+ cells
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext ChIP-Seq ULTRAII DNA Sample Prep Kit (New England Biolabs, inc.)
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
22327597
Reads aligned (%)
69.6
Duplicates removed (%)
24.8
Number of peaks
480 (qval < 1E-05)
hg19
Number of total reads
22327597
Reads aligned (%)
68.8
Duplicates removed (%)
25.3
Number of peaks
402 (qval < 1E-05)
Base call quality data from
DBCLS SRA