Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
Human K562 cells
tissue
Human K562 cells
streptavidin dynabeads
ThermoFisher 65602

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
For ChIP-seq analysis using the Illumina NextSeq500, 10-20 ng of ChIP DNA was processed for library generation using the NEBNext ChIP-seq Library Prep Master Mix following the manufacturer's protocol (New England Biolabs).

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
10101336
Reads aligned (%)
60.1
Duplicates removed (%)
11.7
Number of peaks
179 (qval < 1E-05)

hg19

Number of total reads
10101336
Reads aligned (%)
59.7
Duplicates removed (%)
13.2
Number of peaks
192 (qval < 1E-05)

Base call quality data from DBCLS SRA