Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Breast
Cell type
Mammary gland adenocarcinoma
NA
NA

Attributes by original data submitter

Sample

source_name
mammary gland; metastatic to pleural effusion
disease
adenocarcinoma
germ layer
Ectoderm

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq was carried out as previously described (Buenrostro 2013) and sequenced on an Illumina HiSeq 4000 with 2x100 paired end sequencing.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
33201396
Reads aligned (%)
62.6
Duplicates removed (%)
46.6
Number of peaks
4383 (qval < 1E-05)

hg19

Number of total reads
33201396
Reads aligned (%)
62.4
Duplicates removed (%)
46.6
Number of peaks
4351 (qval < 1E-05)

Base call quality data from DBCLS SRA