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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: Mammary gland adenocarcinoma
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX7023029
GSM4130903: ATAC-Seq MCF7-2; Homo sapiens; ATAC-seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Breast
Cell type
Mammary gland adenocarcinoma
NA
NA
Attributes by original data submitter
Sample
source_name
mammary gland; metastatic to pleural effusion
disease
adenocarcinoma
germ layer
Ectoderm
Sequenced DNA Library
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq was carried out as previously described (Buenrostro 2013) and sequenced on an Illumina HiSeq 4000 with 2x100 paired end sequencing.
Sequencing Platform
instrument_model
Illumina HiSeq 4000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
33201396
Reads aligned (%)
62.6
Duplicates removed (%)
46.6
Number of peaks
4383 (qval < 1E-05)
hg19
Number of total reads
33201396
Reads aligned (%)
62.4
Duplicates removed (%)
46.6
Number of peaks
4351 (qval < 1E-05)
Base call quality data from
DBCLS SRA