SRX7023028
GSM4130902: ATAC-Seq MCF7-1; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Breast
Cell type
Mammary gland adenocarcinoma
NA
NA

Attributes by original data submitter

Sample

source_name
mammary gland; metastatic to pleural effusion
disease
adenocarcinoma
germ layer
Ectoderm

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq was carried out as previously described (Buenrostro 2013) and sequenced on an Illumina HiSeq 4000 with 2x100 paired end sequencing.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
11549640
Reads aligned (%)
65.7
Duplicates removed (%)
37.5
Number of peaks
1603 (qval < 1E-05)

hg38

Number of total reads
11549640
Reads aligned (%)
65.8
Duplicates removed (%)
37.5
Number of peaks
1599 (qval < 1E-05)

Base call quality data from DBCLS SRA