Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
OTX2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived ectodermal cells
NA
NA

Attributes by original data submitter

Sample

source_name
dEC
cell line
HUES64
cell type
dEC
chip antibody
OTX2(Abcam,ab21990,GR9703-1)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
25038557
Reads aligned (%)
93.7
Duplicates removed (%)
3.4
Number of peaks
1447 (qval < 1E-05)

hg19

Number of total reads
25038557
Reads aligned (%)
98.9
Duplicates removed (%)
3.5
Number of peaks
624 (qval < 1E-05)

Base call quality data from DBCLS SRA