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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: MIN6
ATCC
MeSH
RIKEN BRC
SRX701026
GSM1504399: Input; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Pancreas
Cell type
MIN6
NA
NA
Attributes by original data submitter
Sample
source_name
MIN6-4N cells
cell type
Mouse Insulinoma cells
antibody
none
sample type
input
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Millipore ChIP-assay kit Illumina ChIP-Seq DNA sample preparation kit (catalog #: IP-102-1001) protocol was used
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
271583805
Reads aligned (%)
80.4
Duplicates removed (%)
33.5
Number of peaks
1122 (qval < 1E-05)
mm9
Number of total reads
271583805
Reads aligned (%)
98.1
Duplicates removed (%)
29.4
Number of peaks
32 (qval < 1E-05)
Base call quality data from
DBCLS SRA