Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Larvae
Cell type
Eye discs
NA
NA

Attributes by original data submitter

Sample

source_name
L3 eye disc
developmental stage
L3
tissue
eye disc
chip antibody
none
replicates
1
genotype/variation
knock in IMAGO line ato:GFP

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
400 L3 larvae of the ato:GFP genotype were dissected to isolate 800 eye discs that were later fixed and sonicated. A 10% of the sonicated volume was used as the input. The rest was used to isolate the DNA bound to the transcription factor Atonal using anti GFP antibodies. TruSeqLT

Sequencing Platform

instrument_model
NextSeq 500

dm6

Number of total reads
50479123
Reads aligned (%)
90.7
Duplicates removed (%)
29.1
Number of peaks
3598 (qval < 1E-05)

dm3

Number of total reads
50479123
Reads aligned (%)
91.3
Duplicates removed (%)
25.9
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA