Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMAD4

Cell type

Cell type Class
Kidney
Cell type
HGrC1
NA
NA

Attributes by original data submitter

Sample

source_name
HGrC1 (SMAD4 KO)
cell line
HGrC1
chip antibody
Rabbit polyclonal anti-SMAD4 (Proteintech, 10231-1-AP)
genotype/variation
HGrC1 (knockout for SMAD4)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
47921398
Reads aligned (%)
80.9
Duplicates removed (%)
15.9
Number of peaks
1111 (qval < 1E-05)

hg38

Number of total reads
47921398
Reads aligned (%)
83.3
Duplicates removed (%)
14.2
Number of peaks
1392 (qval < 1E-05)

Base call quality data from DBCLS SRA