Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMAD4

Cell type

Cell type Class
Kidney
Cell type
HGrC1
NA
NA

Attributes by original data submitter

Sample

source_name
HGrC1 cell-line
cell line
HGrC1
chip antibody
Rabbit polyclonal anti-SMAD4 (Proteintech, 10231-1-AP)
genotype/variation
HGrC1 cell-line transduced with wildtype (WT) FOXL2

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
15062104
Reads aligned (%)
71.2
Duplicates removed (%)
24.6
Number of peaks
676 (qval < 1E-05)

hg38

Number of total reads
15062104
Reads aligned (%)
73.3
Duplicates removed (%)
23.0
Number of peaks
645 (qval < 1E-05)

Base call quality data from DBCLS SRA