Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Neural
Cell type
COG-N-415
NA
NA

Attributes by original data submitter

Sample

source_name
neuroblastoma-derived cell line
growth media
IMDM, 20% FBS, 2mM L-glutamine, 1:1000 ITS Premix Supplement
cell line
COG-N-415
chip antibody
H3K4me1 (Active Motif, #39297)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
52912938
Reads aligned (%)
98.5
Duplicates removed (%)
8.8
Number of peaks
32872 (qval < 1E-05)

hg19

Number of total reads
52912938
Reads aligned (%)
98.2
Duplicates removed (%)
8.9
Number of peaks
32823 (qval < 1E-05)

Base call quality data from DBCLS SRA