Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: gastrocnemius
ATCC
MeSH
RIKEN BRC
SRX6931421
Gascroc ICE postTAM ChIP-seq H3K27ac rep1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Muscle
Cell type
gastrocnemius
NA
NA
Attributes by original data submitter
Sample
Sample #
ICE_NGS_#10
strain
C57BL/6
age
16 mo.
sex
male
tissue
Gastrocnemius
Sequenced DNA Library
library_name
SINCLAIR_NGS_00040
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
26003319
Reads aligned (%)
71.3
Duplicates removed (%)
50.0
Number of peaks
17924 (qval < 1E-05)
mm9
Number of total reads
26003319
Reads aligned (%)
71.2
Duplicates removed (%)
50.0
Number of peaks
17891 (qval < 1E-05)
Base call quality data from
DBCLS SRA